Publications

  1. Michael R. McLaren, Jacob T. Nearing, Amy D. Willis, Karen G. Lloyd, & Benjamin J. Callahan. Accurate inference of microbial differential abundance from taxonomically-biased microbiome measurements. In Draft.

  2. Jacob T. Nearing, Gavin M. Douglas, Molly Hayes, Jocelyn MacDonald, Dhwani Desai, Nicole Allward, Casey M.A. Jones, Robyn Wright, Akhilesh Dhanani, André M. Comeau, & Morgan G.I. Langille. (2021). Microbiome differential abundance methods produce different results across 38 datasets. Nature Communications

  3. Vanessa DeClercq, Jacob T. Nearing, Morgan G.I. Langille. (2021) Investigation of impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions. PLOS ONE

  4. Jacob T. Nearing, André M. Comeau, & Morgan G.I. Langille. (2021). Identifying biases and their potential solutions in human microbiome studies. Microbiome

  5. Mohammad Sultan, Jacob T. Nearing, Justin M. Brown, Thomas T. Huynh, Brianne M. Cruickshank, Emily Lamoureaux, Dejan Vidovic, Margaret L. Dahn, Wasundara Fernando, Krysta M. Coyle, Carman A. Giacomantonio, Morgan G.I. Langille, & Paola Marcato. (2021). An in vivo genome-wide shRNA screen identifies BCL6 as a targetable biomarker of paclitaxel resistance in breast cancer. Molecular Oncology

  6. Janie Zhang, Jamie Cook, Jacob T. Nearing, Junzeng Zhang, Renee Raudonis, Bernard R Glick, Morgan G.I. Langille, & Zhenyu Cheng. (2021). Harnessing the plant microbiome to promote the growth of agricultural crops. Microbiological Research

  7. Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, & Morgan G.I. Langille. (2020). Assessing the variation within the oral microbiome of healthy adults. mSphere

  8. Katherine A. Dunn, Jessica Connors, Joseph P. Bielawski, Jacob T. Nearing, Morgan G.I. Langille, Johan Van Limbergen, Conrad Vincent Fernandez, Tamara MacDonald & Ketan Kulkarni. (2020). Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute lymphoblastic leukemia. Leukemia & Lymphoma

  9. Svetlana N. Yurgel, Jacob T. Nearing, Gavin M. Douglas, & Morgan G.I. Langille. (2019). Metagenomic functional shifts to plant induced environmental changes. Frontiers in Microbiology

  10. Jacob T. Nearing, Jessica Connors, Scott Whitehouse, Johan Van Limbergen, Tamara Macdonald, Ketan Kulkarni, & Morgan G.I. Langille. (2019). Infectious complications are associated with alterations in the gut microbiome in pediatric patients with acute lymphoblastic leukemia. Frontiers in Cellular and Infection Microbiology

  11. Jacob T. Nearing, Gavin M. Douglas, Andre Comeau, & Morgan G.I. Langille. (2018). Denoising the Denoisers: An independent evaluation of microbiome sequence error-correction approaches. PeerJ.